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Phospholipids In Ldl

Phospholipids are a fundamental class of lipids crucial for the structure and function of all biological membranes and lipoprotein particles. In the context of human health, they are integral components of low-density lipoprotein (LDL) particles, often referred to as “bad cholesterol.” LDL particles are primarily responsible for transporting cholesterol from the liver to peripheral tissues, where it is used for various cellular processes. The specific types and arrangement of phospholipids within LDL particles are essential for maintaining their structural integrity, enabling their interactions with enzymes and receptors, and ultimately influencing overall lipid metabolism and cardiovascular health.

LDL particles are complex, spherical macromolecules. Their structure consists of a hydrophobic core rich in cholesterol esters and triglycerides, encased by a hydrophilic monolayer of phospholipids, unesterified cholesterol, and a single large apolipoprotein, APOB. This outer phospholipid layer provides stability and allows the particle to circulate in the aqueous environment of the bloodstream. Phospholipids are characterized by a glycerol backbone that can have ester or ether bonds, and specific fatty acid side chains varying in length and saturation. [1]This precise molecular architecture is vital for the proper function of LDL, including its uptake by cells via the low-density lipoprotein receptor (LDLR). [2] Genetic variations, such as those affecting the LIPC gene, may influence the substrate specificity for different phospholipids, indicating a genetic influence on these critical metabolic pathways. [1] Furthermore, gene clusters like FADS1-FADS2 are associated with the fatty acid composition in phospholipids, potentially impacting their properties and the overall function of lipoproteins. [3]

The composition and metabolism of phospholipids within LDL particles are directly linked to plasma lipid levels and the risk of various diseases. Dysregulation of LDL cholesterol concentrations is a well-established major risk factor for developing dyslipidemia and coronary artery disease.[4] Genetic variations influencing lipid metabolism, including those in genes such as APOB, LDLR, HMGCR, and PCSK9, have been shown to alter LDL levels. [5] These genetic factors significantly contribute to the heritability of circulating lipid levels. [4]For instance, specific single nucleotide polymorphisms (SNPs) on chromosome 1p13, near genes likeCELSR2 and SORT1, have been robustly associated with variations in LDL cholesterol concentrations. [5]Understanding the intricate interplay between these genetic factors and the phospholipid makeup of LDL is crucial for unraveling their collective impact on cardiovascular health.

The study of phospholipids in LDL, and the genetic factors governing their metabolism, holds substantial public health importance. Cardiovascular diseases, including coronary artery disease and stroke, represent leading causes of morbidity and mortality globally.[2]Genetic insights into lipid metabolism offer opportunities to identify individuals at increased risk for dyslipidemia and related cardiovascular conditions. This knowledge can guide the development of personalized prevention strategies, ranging from targeted lifestyle interventions to novel therapeutic approaches. Advances from large-scale genomic studies, such as genome-wide association studies (GWAS), have successfully identified numerous genetic loci that influence lipid concentrations, thus enhancing our understanding of polygenic dyslipidemia.[5]Continued research into the genetic and molecular underpinnings of phospholipid metabolism in LDL promises to yield improved diagnostic tools and more effective treatments for cardiovascular diseases, thereby reducing their significant societal burden.

Limited Phenotypic Granularity and Ascertainment Biases

Section titled “Limited Phenotypic Granularity and Ascertainment Biases”

The primary focus of many studies has been on broad lipid phenotypes such as total LDL cholesterol, HDL cholesterol, and triglycerides, rather than the specific phospholipid composition within LDL particles The effect of PCSK9 alleles on LDL cholesterol concentrations has been observed, with some lower-frequency alleles significantly affecting levels. [6] Similarly, the rs6511720 variant within the LDLR gene itself can directly influence the number and functionality of LDL receptors, thereby altering the uptake of LDL particles by cells. Variations in these genes directly impact the overall number of circulating LDL particles, which in turn dictates the total phospholipid load carried within them.

Further affecting cholesterol homeostasis are variants like rs12916 , located near both HMGCR and CERT1. HMGCR (HMG-CoA Reductase) is the rate-limiting enzyme in cholesterol biosynthesis, and its activity is a primary target for statin drugs. [6] CERT1 (Ceramide Transport Protein 1) is involved in intracellular lipid trafficking, specifically moving ceramides. The proximity of rs12916 to these genes suggests potential influences on both cholesterol production and the handling of other lipids, which can indirectly affect the phospholipid composition of lipoproteins. The rs12151108 variant, located in the region between SMARCA4 and LDLR, may also have regulatory effects on LDLR expression or function, further influencing LDL clearance. These genetic loci collectively shape the pool of available LDL particles and their capacity to carry phospholipids.

The structural integrity and metabolism of LDL particles are also influenced by genes such as APOB, CELSR2, and PSRC1. Apolipoprotein B (APOB) is the sole protein component of LDL, essential for its structural formation and interaction with the LDLR. [7] Variants like rs563290 and rs562338 near APOB can affect the synthesis, secretion, or structural properties of APOB, leading to changes in LDL particle size, density, and lipid content, including phospholipids. Genes likeCELSR2 (Cadherin EGF LAG Seven-Pass G-Type Receptor 2) and PSRC1(Proline/Serine-Rich Coiled-Coil 1) are often found in gene clusters associated with lipid levels. Variants such asrs646776 and rs12740374 in CELSR2are known to be associated with LDL cholesterol concentrations, likely impacting lipoprotein metabolism through mechanisms that can influence the overall lipid and phospholipid cargo of LDL.[8]

Beyond the direct pathways of cholesterol metabolism, other genes contribute to the broader metabolic landscape affecting LDL phospholipids. The rs7254892 variant in NECTIN2(Nectin Cell Adhesion Molecule 2), while primarily known for its role in cell adhesion, has also been implicated in lipid metabolism, potentially through inflammatory responses or cellular signaling pathways that modulate lipid transport and lipoprotein remodeling. Similarly, thers62117160 variant, located within a region spanning CEACAM16-AS1 (an antisense RNA) and BCL3 (B-cell CLL/lymphoma 3), could influence gene expression or regulatory networks that impact lipid-related processes or inflammation, indirectly affecting LDL phospholipid content. Furthermore, ALDH1A2 (Aldehyde Dehydrogenase 1 Family Member A2) and its variants, rs261291 and rs7177289 , are crucial for retinoic acid synthesis, a potent signaling molecule that regulates numerous metabolic pathways, including lipid synthesis and breakdown. [9] Alterations in retinoic acid signaling due to ALDH1A2 variants can influence the overall lipid environment, thereby affecting the quantity and composition of phospholipids in circulating LDL.

Understanding Low-Density Lipoproteins and Dyslipidemia

Section titled “Understanding Low-Density Lipoproteins and Dyslipidemia”

Low-density lipoproteins (LDL) are a crucial class of lipoprotein particles involved in lipid transport throughout the body. The concentration of these particles, often measured by nuclear magnetic resonance (NMR), is a key indicator in assessing an individual’s lipid profile.[5] Dyslipidemia, a broad term for abnormal levels of lipids (fats) in the blood, is recognized as a complex, polygenic trait. This means that multiple common genetic variants across numerous loci contribute to an individual’s susceptibility and presentation of this condition. [5] The understanding of dyslipidemia involves a conceptual framework where specific genetic alleles can influence the levels of various lipoproteins and apolipoproteins, providing insights into underlying mechanistic hypotheses. [5]

Lipoproteins are classified based on their density and composition, forming a system that includes very low-density lipoprotein (VLDL), intermediate-density lipoprotein (IDL), low-density lipoprotein (LDL), and high-density lipoprotein (HDL).[5] Beyond these main classes, more refined classifications exist, such as HDL2 and HDL3 cholesterol subfractions, which can be separated through methods like chemical precipitation. [5]Diagnostic and measurement approaches for these lipoproteins rely on specific techniques, with nuclear magnetic resonance (NMR) being employed to quantify lipoprotein particle concentrations, while other specialized lipoproteins like lipoprotein(a) are also assessed.[5] These measurements provide critical data for understanding an individual’s lipid metabolism and risk profiles, with thresholds and cut-off values for these concentrations often used in clinical and research settings, though not explicitly detailed in all contexts. [5]

Key Genetic and Biochemical Terminology in Lipid Metabolism

Section titled “Key Genetic and Biochemical Terminology in Lipid Metabolism”

The metabolism of lipids involves several key apolipoproteins, including APOA-I, APOB, APOC-III, and APOE, which are integral components of lipoprotein particles and play specific roles in their function and catabolism.[5] For instance, APOC-IIIis an inhibitor of triglyceride catabolism, meaning it impedes the breakdown of triglycerides, and its levels can be influenced by genetic variations.[5] Specific genetic loci and their associated alleles, such as the GCKR P446L allele (rs1260326 ), have been linked to significant increases in APOC-III concentrations. [5] Another important genetic variant is the LPA coding SNP rs3798220 , which has shown associations with LDL cholesterol levels and is strongly linked to lipoprotein(a) levels.[5] These associations are typically identified based on prespecified statistical thresholds, such as P < 5 × 10-8, to ensure the robustness of the genetic findings. [5]

The concentration and composition of phospholipids within low-density lipoprotein (LDL) particles are influenced by a complex interplay of genetic factors, the regulatory mechanisms of lipid metabolism, and associations with various health conditions. These factors collectively determine an individual’s susceptibility to altered phospholipid profiles in LDL.

The levels of phospholipids in LDL are significantly influenced by an individual’s genetic makeup, with circulating lipid levels demonstrating high heritability.[4] Historical studies of individuals exhibiting extreme lipid values or diagnosed with Mendelian forms of dyslipidemias have consistently revealed the involvement of numerous genes and their corresponding proteins in lipid metabolism. [4] However, for the broader population, common genetic variants at multiple loci contribute to a polygenic dyslipidemia, with these variants collectively accounting for only a modest fraction, approximately 5-8%, of the observed variation in lipid traits. [2]

Genome-wide association studies have pinpointed a multitude of loci associated with lipid concentrations, including those directly impacting LDL cholesterol and, by extension, its phospholipid content. Key genes implicated include ABCA1, APOE, APOB, CETP, GCKR, LDLR, LPL, LIPC, LIPG, PCSK9, MVK-MMAB, GALNT2, SORT1, TRIB1, MLXIPL, ANGPTL3, NCAN, TBL2, CILP2-PBX4, HMGCR, CELSR2, PSRC1, and MYBPHL. [2]For instance, specific genetic variations like the single nucleotide polymorphismrs4775041 near LIPC show associations with phosphatidylethanolamines, a type of phospholipid, indicating a role in the cholesterol pathway. [1] Furthermore, variants in the FADS1-FADS2 gene cluster are strongly linked to the fatty acid composition within serum phospholipids [3] influencing the overall characteristics of these molecules within lipoproteins.

The genes associated with lipid concentrations, including phospholipids in LDL, exert their influence across the entire spectrum of lipoprotein formation, activity, and turnover. This involves a wide array of biological functions, such as the encoding of apolipoproteins likeAPOE, APOB, and APOA5, which are crucial structural components of lipoproteins. [2] Other genes contribute by producing transcription factors, such as MLXIPLwhich activates triglyceride synthesis, or enzymes likeMVK involved in cholesterol biosynthesis. [2] Moreover, transporters like ABCA1 facilitate cholesterol efflux, while CETP mediates cholesterol ester transfer, all of which indirectly modulate the phospholipid content and composition within LDL particles. [2]

Enzymatic activities and receptor functions also play pivotal roles in regulating LDL phospholipids. Lipases such as LPL, LIPC, and LIPGare critical for lipoprotein hydrolysis and remodeling, directly affecting lipid content.[2] The LDLRgene, encoding the low-density lipoprotein receptor, is fundamental for cellular uptake of LDL particles, with variations impacting LDL cholesterol levels.[5] Proteins like ANGPTL3 act as lipase inhibitors, further influencing lipid metabolism, while potential receptor-modifying glycosyltransferases like GALNT2can alter lipoprotein-receptor interactions.[2] The proprotein convertase subtilisin/kexin type 9 (PCSK9) also contributes by accelerating the degradation of the LDL receptor, thereby regulating LDL cholesterol levels. [10]

Variations in lipid metabolism, including those affecting phospholipids in LDL, are often linked to a spectrum of complex diseases. For instance, the genetic polymorphismrs4775041 , which associates with phospholipids and blood cholesterol levels, also shows weak associations with type 2 diabetes, bipolar disorder, and rheumatoid arthritis.[1] This suggests that altered phospholipid profiles could serve as intermediate phenotypes, bridging specific genetic variants to the pathogenesis of broader health conditions. [1]

Elevated low-density lipoprotein cholesterol concentrations are well-established risk factors for cardiovascular diseases such as coronary artery disease and stroke, which are leading causes of morbidity, mortality, and disability.[2]Notably, genetic variants identified in research studies that are associated with increased LDL cholesterol concentrations also exhibited an increased frequency in individuals diagnosed with coronary artery disease.[2]This strong association highlights how genetic predispositions influencing LDL, and consequently its phospholipid content, contribute to the overall risk of developing severe cardiovascular conditions.

Phospholipids are crucial structural components of lipoproteins, including low-density lipoprotein (LDL), where they form a monolayer surrounding a core of neutral lipids like cholesterol esters and triglycerides. The specific fatty acid composition of these phospholipids significantly influences the physical properties and metabolic fate of lipoprotein particles. Genetic factors can directly impact this composition, as evidenced by common genetic variants within the_FADS1_ and _FADS2_ gene cluster, which are associated with the fatty acid makeup in phospholipids. [11]These genes encode desaturase enzymes that play a vital role in synthesizing polyunsaturated fatty acids, thus regulating the types of fatty acids available for phospholipid construction and ultimately impacting overall lipid homeostasis and lipoprotein function.

Genetic variations play a substantial role in regulating plasma lipoprotein levels, which include LDL. For instance, genotypes related to the_ABCG5_ and _ABCG8_genes, which encode ATP-binding cassette transporters, are known to influence plasma lipoprotein levels.[12]These transporters are involved in the biliary and intestinal secretion of sterols, thereby regulating cholesterol absorption and excretion and indirectly affecting the pool of lipids available for lipoprotein synthesis and composition, including the phospholipids within these particles. Furthermore, genetic variations in other genes like_ANGPTL4_have been identified to impact lipid profiles, with specific variants contributing to reduced triglyceride levels and increased high-density lipoprotein (HDL).[13] These genetic insights highlight intricate regulatory networks that fine-tune lipid transport and processing, ultimately influencing the circulating levels and characteristics of lipoproteins.

Regulatory Networks and Systemic Metabolic Control

Section titled “Regulatory Networks and Systemic Metabolic Control”

Beyond direct lipid transport genes, broader regulatory networks involving key transcription factors also modulate systemic metabolic processes that influence lipoprotein metabolism. For example, the hepatocyte nuclear factor-4 alpha (_HNF4A_) is a master regulator of numerous genes involved in metabolism. Functional polymorphisms within the _HNF4A_ gene have been associated with altered beta-cell function and type 2 diabetes. [14]Such systemic metabolic disruptions can indirectly but significantly impact hepatic lipid synthesis, lipoprotein assembly, and catabolism, thereby influencing the overall lipid environment and the specific composition of phospholipids within lipoproteins like LDL. This underscores the interconnectedness of various metabolic pathways and their collective influence on lipid health.

Pathophysiological Processes of Dyslipidemia

Section titled “Pathophysiological Processes of Dyslipidemia”

Disruptions in the genetic and metabolic pathways governing lipid metabolism can lead to dyslipidemia, a condition characterized by abnormal concentrations of lipoproteins, including phospholipids in LDL, in the blood. Common genetic variants across multiple loci are known to contribute to polygenic dyslipidemia.[5]This imbalance in lipid levels is a key pathophysiological process linked to various health conditions. Therapeutic interventions, such as treatment with atorvastatin, aim to normalize plasma lipoprotein levels, demonstrating the clinical relevance of understanding these molecular and cellular pathways.[12] The interplay of genetic predisposition, metabolic regulation, and environmental factors ultimately dictates the health of the lipid profile and the risk of related diseases.

Pathways and Mechanisms of Phospholipids in LDL

Section titled “Pathways and Mechanisms of Phospholipids in LDL”

Phospholipid Metabolism and Fatty Acid Remodeling

Section titled “Phospholipid Metabolism and Fatty Acid Remodeling”

Phospholipid molecules, as crucial constituents of low-density lipoproteins (LDL), undergo dynamic metabolic processes that dictate their specific composition and functional roles. Phosphatidylethanolamines, for instance, are identified as significantly affected metabolites, prompting investigations into their broader involvement in cholesterol metabolism. [1] The precise fatty acid composition within these phospholipids is substantially influenced by genetic variants located within the FADS1 FADS2 gene cluster. [11] Specifically, FADS1 is instrumental in the synthesis of phosphatidylcholine by converting essential linoleic acids into long-chain polyunsaturated fatty acids, thereby directly shaping the acyl chain makeup of various phospholipids. [1]These enzymatic desaturation reactions profoundly impact phospholipid properties such as membrane fluidity and signaling capabilities, which are vital for the integrity and function of lipoprotein particles.

Metabolic regulation also involves enzymes like hepatic lipase (LIPC), which acts on lipid substrates in circulating lipoproteins, including phospholipids. Although LIPC is primarily recognized for hydrolyzing triglycerides and phospholipids in high-density lipoproteins (HDL), genetic polymorphisms can alter its substrate specificity. [1] Such modifications can indirectly affect the broader cholesterol pathway and, consequently, the phospholipid landscape within LDL particles. Variations in these enzymatic pathways can lead to shifts in the balance of different phospholipid species, thereby influencing LDL particle structure, stability, and its subsequent interactions with cellular receptors.

Phospholipids serve as fundamental structural components of lipoproteins, including LDL, forming the outer monolayer that encapsulates the hydrophobic core of triglycerides and cholesterol esters. The Phospholipid Transfer Protein (PLTP) directly facilitates the transfer and exchange of phospholipids between various lipoproteins, thereby significantly influencing their size, composition, and overall metabolism. Studies indicate that overexpression ofPLTPleads to increased HDL cholesterol, highlighting its crucial role in lipoprotein remodeling and, by extension, its impact on the phospholipid content and characteristics of LDL particles.[15]Similarly, the activity of key lipases such as Lipoprotein Lipase (LPL) and Hepatic Lipase (LIPC), alongside their inhibitors like Angiopoietin-like protein 3 (ANGPTL3), actively modulates the triglyceride and phospholipid content of lipoproteins, thereby affecting their circulation half-life and cellular uptake.[2]

The cellular uptake and clearance of phospholipid-rich LDL particles are primarily orchestrated by the Low-Density Lipoprotein Receptor (LDLR). The abundance of LDLR on cell surfaces is a critical determinant of circulating LDL levels. A pivotal regulatory mechanism for LDLR involves Proprotein Convertase Subtilisin/Kexin type 9 (PCSK9), which binds to LDLR and targets it for degradation within lysosomes, a process occurring in a post-endoplasmic reticulum compartment. [10] This intricate post-transcriptional regulation of LDLR by PCSK9 is essential for controlling systemic LDL levels and, consequently, the flux of phospholipids carried by these particles. Genetic variations in apolipoprotein-encoding genes, such as APOB (the primary structural protein of LDL) and the APOA5-APOA4-APOC3-APOA1 and APOE-APOC1-APOC4-APOC2clusters, directly influence the assembly, stability, and cellular recognition of lipoprotein particles, profoundly affecting the functional significance of their phospholipid components.[2]

Transcriptional and Post-Translational Regulation of Lipid Homeostasis

Section titled “Transcriptional and Post-Translational Regulation of Lipid Homeostasis”

The precise balance of phospholipids and LDL cholesterol is maintained through sophisticated regulatory mechanisms operating at multiple levels, from gene expression to post-translational protein modifications. Key transcription factors, such as MLXIPL, are instrumental in lipid homeostasis by binding to and activating specific motifs within the promoters of genes responsible for triglyceride synthesis.[2] This transcriptional control influences the availability of substrates for phospholipid synthesis and the overall lipid cargo of very-low-density lipoproteins (VLDL) and subsequent LDL. Similarly, Sterol Regulatory Element-Binding Protein 2 (SREBP2) acts as a master transcriptional regulator of cholesterol metabolism, dictating the expression of enzymes such as mevalonate kinase (MVK), which catalyzes an early step in cholesterol biosynthesis, and MMAB, involved in cholesterol degradation. [2]These intricate transcriptional networks directly govern the cellular supply and demand of lipids, thereby influencing lipoprotein composition and remodeling, including their phospholipid content.

Beyond transcriptional governance, post-translational modifications and allosteric control mechanisms finely tune the activity and stability of proteins central to lipid metabolism. PCSK9 provides a clear example of post-translational regulation by inducing the proteolytic degradation of the LDLR, which consequently diminishes LDL clearance from the bloodstream. [16] Furthermore, enzymes like glycosyltransferases, exemplified by GALNT2, may modify the structural integrity of lipoproteins or their receptors, altering their stability or recognition by other cellular components. [2]Such modifications can profoundly impact the dynamics of phospholipid transfer and overall lipoprotein metabolism. Genetic variants in genes such asHMGCR, which encodes HMG-CoA reductase, have been shown to affect alternative splicing, directly influencing enzyme activity and circulating LDL cholesterol levels, thereby underscoring the depth of regulatory control over lipid pathways. [17]

The regulation of phospholipids within LDL is intricately integrated into a complex biological network, where extensive pathway crosstalk and synergistic interactions collectively govern systemic lipid homeostasis and influence susceptibility to various diseases. Genetic variants that impact phospholipid composition, such as those found within the FADSgene cluster, are associated not only with circulating fatty acid profiles but also with a heightened risk of broader metabolic disorders, including cardiovascular disease.[18] Moreover, specific genetic polymorphisms affecting phospholipids, such as rs4775041 , exhibit weak associations with complex conditions like type 2 diabetes, bipolar disorder, and rheumatoid arthritis.[1] These findings suggest that phospholipid metabolism can serve as an intermediate phenotype, bridging the gap between genetic variation and the etiology of complex diseases, though further research is required to fully elucidate these connections.

Dysregulation within these highly interconnected pathways significantly contributes to polygenic dyslipidemia, a condition characterized by abnormal lipid levels that substantially elevate the risk of coronary artery disease. Numerous genetic loci identified through genome-wide association studies collectively explain variations in LDL cholesterol and triglyceride levels, encompassing genes that influence every stage of lipoprotein metabolism—from biosynthesis and transport to their ultimate catabolism.[2] For instance, specific variants in PCSK9that lead to lower LDL cholesterol are associated with protection against coronary heart disease, highlighting the therapeutic potential of targeting key regulatory nodes within this complex system.[19]The intricate interplay between phospholipid composition, lipoprotein dynamics, and the broader metabolic milieu exemplifies a systems-level integration where emergent properties, such as overall cardiovascular risk, arise from the complex and finely tuned interactions of individual molecular pathways.

Many common genetic variants contribute to polygenic dyslipidemia, impacting the overall lipid profile and, consequently, the phospholipid composition within LDL particles. [5] Variations in gene clusters like FADS1-FADS2 are specifically associated with the fatty acid composition of phospholipids, influencing the stability and function of lipoproteins. [11]Understanding these genetic predispositions offers a foundation for personalized risk stratification, enabling the identification of individuals at higher risk for atherosclerosis and related cardiovascular outcomes long before clinical symptoms emerge. Such genetic insights can predict disease progression and inform early prevention strategies.

Diagnostic Utility and Treatment Personalization for Dyslipidemia

Section titled “Diagnostic Utility and Treatment Personalization for Dyslipidemia”

Genetic insights into phospholipid and lipoprotein metabolism hold significant clinical applications for diagnostic utility and guiding treatment selection. For instance, genotypes ofATP binding cassette transporter G5 (ABCG5) and G8 (ABCG8) influence plasma lipoprotein levels, including LDL, both before and after treatment with statins like atorvastatin.[12] Identifying such genetic variations can help clinicians assess an individual’s unique lipid profile, improve risk assessment, and tailor lipid-lowering therapies for optimal efficacy and potentially predict treatment response.

Furthermore, variations in genes like ANGPTL4, which are associated with reduced triglycerides and increased high-density lipoprotein (HDL), can indirectly impact LDL phospholipid metabolism by altering overall lipoprotein dynamics.[13] This genetic information can be used in monitoring strategies to assess the effectiveness of interventions and adjust treatment regimens, contributing to more precise patient care and better long-term outcomes.

Associations with Metabolic Comorbidities and Syndromic Presentations

Section titled “Associations with Metabolic Comorbidities and Syndromic Presentations”

The genetic factors influencing phospholipids in LDL and broader lipid metabolism are often intertwined with other metabolic conditions, leading to overlapping phenotypes and complications. For example, functional polymorphisms inhepatocyte nuclear factor-4alpha (HNF4A) have been linked to type 2 diabetes and altered beta-cell function among Danes. [14] Given the strong association between dyslipidemia and metabolic syndrome, understanding these genetic connections provides a clearer picture of an individual’s overall metabolic health and their susceptibility to related complications. This understanding can aid in developing holistic prevention and management strategies for patients with syndromic presentations involving both dyslipidemia and other metabolic disorders.

RS IDGeneRelated Traits
rs7254892 NECTIN2total cholesterol measurement
low density lipoprotein cholesterol measurement
glycerophospholipid measurement
apolipoprotein A 1 measurement
apolipoprotein B measurement
rs62117160 CEACAM16-AS1 - BCL3Alzheimer disease, family history of Alzheimer’s disease
apolipoprotein A 1 measurement
apolipoprotein B measurement
C-reactive protein measurement
cholesteryl ester 18:2 measurement
rs12151108 SMARCA4 - LDLRtotal cholesterol measurement
low density lipoprotein cholesterol measurement
choline measurement
cholesterol:total lipids ratio, blood VLDL cholesterol amount, chylomicron amount
esterified cholesterol measurement
rs12740374 CELSR2low density lipoprotein cholesterol measurement
lipoprotein-associated phospholipase A(2) measurement
coronary artery disease
body height
total cholesterol measurement
rs562338 APOB - TDRD15low density lipoprotein cholesterol measurement
total cholesterol measurement, hematocrit, stroke, ventricular rate measurement, body mass index, atrial fibrillation, high density lipoprotein cholesterol measurement, coronary artery disease, diastolic blood pressure, triglyceride measurement, systolic blood pressure, heart failure, diabetes mellitus, glucose measurement, mortality, cancer
total cholesterol measurement, diastolic blood pressure, triglyceride measurement, systolic blood pressure, hematocrit, ventricular rate measurement, glucose measurement, body mass index, high density lipoprotein cholesterol measurement
total cholesterol measurement
triglyceride measurement
rs11591147
rs11206517
rs472495
PCSK9low density lipoprotein cholesterol measurement
coronary artery disease
osteoarthritis, knee
response to statin, LDL cholesterol change measurement
low density lipoprotein cholesterol measurement, alcohol consumption quality
rs112875651 TRIB1ALlow density lipoprotein cholesterol measurement
total cholesterol measurement
reticulocyte count
diastolic blood pressure
systolic blood pressure
rs147711004 BCAM - NECTIN2anxiety measurement, triglyceride measurement
Alzheimer disease
Alzheimer’s disease biomarker measurement
C-reactive protein measurement
body mass index
rs12916 HMGCR, CERT1low density lipoprotein cholesterol measurement
total cholesterol measurement
social deprivation, low density lipoprotein cholesterol measurement
anxiety measurement, low density lipoprotein cholesterol measurement
depressive symptom measurement, low density lipoprotein cholesterol measurement
rs58542926 TM6SF2triglyceride measurement
total cholesterol measurement
serum alanine aminotransferase amount
serum albumin amount
alkaline phosphatase measurement

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[6] Goldstein JL, et al. HMG-CoA reductase and the regulation of cholesterol biosynthesis. Nature. 1980 Nov 6;288(5786):67-71.

[7] Olofsson SO, et al. Apolipoprotein B: A Key to Understanding Lipoprotein Metabolism. J Intern Med. 1999 Sep;246(3):355-367.

[8] Assimes TL, et al. Genetic determinants of plasma lipids and lipoproteins: new approaches to old problems. Nat Rev Cardiol. 2011 Apr;8(4):213-21.

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[10] Maxwell, K. N., F. A. Fisher, and J. L. Breslow. “Overexpression of PCSK9 accelerates the degradation of the LDLR in a post-endoplasmic reticulum compartment.” Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 6, 2005, pp. 2069–2074.

[11] Schaeffer L, et al. Common genetic variants of the FADS1 FADS2 gene cluster and their reconstructed haplotypes are associated with the fatty acid composition in phospholipids. Hum. Mol. Genet. 2006; 15:1745–1756.

[12] Kajinami K, Brousseau ME, Nartsupha C, Ordovas JM, Schaefer EJ. ATP binding cassette transporter G5 and G8 genotypes and plasma lipoprotein levels before and after treatment with atorvastatin. J. Lipid Res. 2004; 45:653–656.

[13] Romeo S, et al. Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL. Nat. Genet. 2007; 39:513–516.

[14] Ek J, et al. The functional Thr130Ile and Val255Met polymorphisms of the hepatocyte nuclear factor-4alpha (HNF4A): gene associations with type 2 diabetes or altered beta-cell function among Danes. J. Clin. Endocrinol. Metab. 2005; 90:3054–3059.

[15] Kathiresan S, et al. “Common variants at 30 loci contribute to polygenic dyslipidemia.” Nat Genet. 2009; 41:56–65.

[16] Park, S. W., Y. A. Moon, and J. D. Horton. “Post-transcriptional regulation of low density lipoprotein receptor protein by proprotein convertase subtilisin/kexin type 9a in mouse liver.”Journal of Biological Chemistry, vol. 279, no. 48, 2004, pp. 50630–50638.

[17] Burkhardt, R., et al. “Common SNPs in HMGCR in micronesians and whites associated with LDL-cholesterol levels affect alternative splicing of exon13.” Arterioscler Thromb Vasc Biol, vol. 28, no. 11, 2008, pp. 2071-8.

[18] Malerba, G., et al. “SNPs of the FADS Gene Cluster are Associated with Polyunsaturated Fatty Acids in a Cohort of Patients with Cardiovascular Disease.”Lipids, vol. 43, no. 3, 2008, pp. 289–299.

[19] Cohen, J. C., et al. “Sequence variations in PCSK9, low LDL, and protection against coronary heart disease.”New England Journal of Medicine, vol. 354, no. 12, 2006, pp. 1264–1272.